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  1. <html>
  2. <head><title>Estrogen, memory and heredity: Imprinting and the stress response</title></head>
  3. <body>
  4. <h1>
  5. Estrogen, memory and heredity: Imprinting and the stress response
  6. </h1>
  7. <p>
  8. <hr />
  9. <hr />
  10. IN OUTLINE: Stresses, including estrogen excess, activate the Heat Shock Proteins (HSP), the
  11. stress-proteins, a primitive defense system. Heat Shock Proteins and "hormone receptors" are closely related
  12. and interdependent. Stress (at least partly via HSP) activates viral expression, ordinary gene expression,
  13. and destabilizes the genome, activating the "endonucleases," enzymes which break up DNA chains. Stress
  14. increases genetic variability. DNA chains can be chemically modified (e.g., methylated) in a way that limits
  15. enzymes' accesss, probably as protection, and to regulate gene expression. Genes, and subsequent growth and
  16. development, are modified by the prenatal hormonal environment, that of the newborn, and even that of the
  17. parents before conception.
  18. <em>Genomic imprinting</em> makes maternal genes behave differently from paternal genes.
  19. <em>Hormonal imprinting</em> early in life sets the pattern of expression of genes. "Crossing-over"
  20. intermixes the genes on the chromosomes as cells multiply. Stresses and regulatory substances can change the
  21. patterns of gene expression that define cell types. "Stem cells" are those capable of renewing tissues, and
  22. may be "pluripotent," able to become glial cells and neurons in the brain, or, in the bone marrow, to become
  23. red blood cells or white blood cells, depending on regulatory influences. "Cloning" animals from body cells
  24. strongly suggests that any cell is potentially totipotent, able to differentiate into any other type of
  25. cell. We are "imprinted" by our mothers' hormonal and nutritional conditions, but we can intervene to
  26. correct these "inherited" conditions, by maintaining optimal hormonal and nutritional balances.
  27. <hr />
  28. <hr />
  29. Recent work in several areas of biology is showing that heredity is not rigidly deterministic, in the way
  30. implied by traditional genetics, and it is opening the way for the development of therapies for incurable,
  31. chronic, or congenital problems, <em>in natural and holistic ways that don't involve the mechanistic
  32. interventions of "gene therapy" or "genetic engineering."
  33. </em> For example, nontoxic treatments for cancer that were demonstrated decades ago, were discarded because
  34. they didn't seem consistent with "genetics." Many problems that are classified as congenital or genetic,
  35. turn out to be physiological, and correctable. Even the brain and the heart, which until recently were
  36. considered to be incapable of regenerative repair, are now seen to be capable of great anatomical
  37. flexibility.
  38. </p>
  39. <p>
  40. There are still great authoritarian forces opposed to recognizing, and supporting, the organism's full
  41. potential. <strong>The most useful therapies will remain in obscurity until many people see that those
  42. therapies have a firmer scientific foundation than orthodox (antiquated) medical genetics has.
  43. </strong>Over 100 years ago, Samuel Butler had an argument with Charles Darwin, and concluded that Darwin
  44. was philosophically muddled, and dishonest. Butler was annoyed that Darwin had belittled the work of his
  45. predecessors, including his grandfather, Erasmus Darwin. Butler was defending the idea of biological
  46. intelligence, the incorporation of experience into physiology and heredity.
  47. </p>
  48. <p>
  49. My parents had an old copy of one of Darwin's books, and I was impressed by the fact that in his
  50. introduction, Darwin was careful to point out that <em>his ideas were already being misrepresented, and that
  51. he did not hold "natural selection" to be the only mechanism of evolution,</em>
  52. but that several factors were important, including sexual selection and the inheritance of acquired traits.
  53. I suppose those remarks might have been motivated partly by knowing that Butler didn't approve of the way he
  54. was behaving, but they didn't seem to have much influence on the way history has characterized Darwin's
  55. work. All of my biology professors would have been happier if Darwin had never made those remarks. I suspect
  56. that Darwin's problem was that <em>any theory of evolution </em>
  57. was under such heavy attack that he couldn't devote much time to the relatively minor issue of how evolution
  58. works. After Darwin's death, the study of heredity made some strange concessions to the culture of
  59. anti-evolutionism. As people began thinking about "particles that carry heredity," the "genes," ideas from
  60. the anti-evolutionist culture formed much of the context for understanding these "particles."
  61. </p>
  62. <p>
  63. Darwin had suggested that the mature organism reconstitutes itself in the germ cells, by sending gemmules or
  64. pangens (buds or sprouts or derivatives) from its various parts, so that the parent's traits would be
  65. incorporated into the reproductive cells. This was called pangenesis, meaning that the whole organism was
  66. the source for the new offspring. This theory opened the possibility for newly acquired traits to be passed
  67. on. It grew out of the experience of animal breeders and horticulturists, who were dedicated to improving
  68. their breeds and strains, <em>by selecting the best individuals grown under the best conditions.
  69. </em> It was known that the miniature ponies, <strong>Shetlands for example, would grow larger each
  70. generation when bred under favorable conditions of domestication, rather than under the harsh conditions
  71. of their native island.
  72. </strong> It apparently never occurred to most plant and animal breeders that they might be able to <em
  73. >improve</em> a breed by subjecting it to harmful conditions. Around the end of the 19th century, August
  74. Weismann began a systematic attack on the ideas of Darwin. As part of his campaign, he invented the doctrine
  75. that the reproductive cells are absolutely isolated from the rest of the organism, and that they are
  76. immortal. The rest of the organism is built up by the <em>deletion</em> of genetic information. This
  77. doctrine was very convenient for those who maintained that all organisms had been created in a single
  78. moment, and that the <em>appearance</em>
  79. of evolution resulted from the extinction of some species, but not the new appearance of some species. Some
  80. people, reasoning from Weismannism, suggested that evolution might have resulted without any change in the
  81. immortal genetic material, except deletion, in a manner analogous to Weismann's theory of the developing
  82. individual. Bacteria, in that view, would contain all the genes needed to make a tree or a person, and the
  83. more complex forms would have evolved through the differential loss of that primeval genetic information.
  84. </p>
  85. <p>
  86. The changes produced by <em>subtraction</em> were compatible with the notion of fallen man in a corrupt
  87. world, while the <em>addition</em> of heritable traits through experience would connote a sharing in the
  88. process of creation. The hereditary particles making up Weismann's "immortal isolated germ line" connoted a
  89. single original creation.
  90. </p>
  91. <p>
  92. As mutations in the genes came to be seen as a reality, experiments with X-rays suggested to some that all
  93. mutations were harmful, and this attitude blended into the stream of doctrine which insisted that no <em>
  94. improvement</em> could be inherited. Although many experiments showed what seemed to be meaningfully <em
  95. >directed</em> mutations, the doctrine held its ground, as its advocates taught that mutations were always
  96. random. (The doctrine of random change, like the idea that entropy only increases, excluded acts of creation
  97. from the fallen material world.) If a new trait appeared under new conditions, it was said to be <em>only
  98. because an old trait was being revealed by the induced loss</em> of another trait.
  99. </p>
  100. <p>
  101. I think anyone who reads the "landmark publications" in genetics will see that genetics had very little to
  102. do with scientific method, as commonly conceived, and that it had all the traits of a cult. Analysis of the
  103. language of genetics reveals that terms have more often been used to cover up empty speculation than to
  104. clarify situations of fact.
  105. </p>
  106. <p>
  107. Parallel to the way Darwin infuriated Samuel Butler by misrepresenting the origins of his theory, the
  108. neodarwinists who debate the creationists over school textbooks are ignoring the ways in which the culture
  109. of antievolutionism shaped their own view of genetics. The discovery of enzymes that produce DNA modeled on
  110. RNA, "reverse transcriptases," began undermining traditional genetics, because it showed that new
  111. information can enter our genome. The discovery that bacteria can pass "genes" from one individual to
  112. another, conferring antibiotic resistance upon previously sensitive strains, was a major nuisance to people
  113. working in infectious disease, since it complicates the treating of disease, but it indicated that
  114. "evolution," or genetic change, was capable of happening in non-random ways. Early in the study of viral
  115. genetics, many people realized that "organisms" which can't reproduce without their relatively complex
  116. hosts, presented a problem for evolutionary theory. If the virus requires a cell in order to exist, it is
  117. hardly a separate organism. A few people suggested that viruses were, or were based on, functional normal
  118. parts of higher organisms. Some researchers have suggested that virus-like particles serve to carry
  119. information from one part of an organism to other parts of that organism. Mobile genetic elements are now
  120. well recognized, operating within cells, and it is common laboratory practice to use viral particles to
  121. transfer genetic material from one cell to another.
  122. </p>
  123. <p>
  124. Cellular systems which cut and splice nucleic acids, creating sequences of information which don't exist in
  125. the inherited chromosomes, are now accepted parts of cell biology. Hormonal and environmental influences on
  126. the stability of messenger RNA, and on mobile genetic elements, and on genomic stability in general, are
  127. recognized. <strong><em>The center of gravity in the study of the nucleic acids has now shifted from
  128. heredity to development.
  129. </em>Almost nothing remains of Weismannism, which was the foundation of neodarwinism. The "isolation of
  130. the germline" doctrine persists in a few places, such as explaining why "the ovary runs out of eggs,"
  131. despite some examples of egg-cell renewal.</strong>
  132. </p>
  133. <p>
  134. <strong>
  135. But when the identity of "germline cells" is found to depend on signals from the environment, the last
  136. vestige of Weismannian germ-line doctrine disappears.</strong> The only meaning of "germline" is that
  137. some cells are destined to be germ cells, and the meaning disappears when such cells differentiate to form
  138. body parts. (see Donovan, 1998, Labosky, et al., 1994.)
  139. </p>
  140. <p>
  141. The difference between primordial germ cells and embryonic cells is a matter of "imprinting," the process in
  142. which a hormone or "growth factor" or other "signal" directs a cell down a certain course of
  143. differentiation. "Imprinting" is where genetics and physiology, phylogeny and ontoneny, come together, and
  144. the new facts that are being discovered are removing the last vestige of scientific content from
  145. Weismannism/neodarwinism. The argument between Peter Duesberg and the virus establishment, in which Duesberg
  146. argues that acquired immunodeficiency is produced by a variety of causes, including drug use, and the
  147. establishment argues that the HIV retrovirus is the only cause, becomes a little clearer when we consider it
  148. in the context of the larger debate between the genetic determinists and the Darwinian adaptationists. I
  149. will talk about that in more detail in a newsletter on immunodeficiency.
  150. </p>
  151. <p>
  152. The issues of cancer, aging, and "hormone receptors," are also illuminated by seeing the organism as capable
  153. of adaptive modification of its genes.
  154. </p>
  155. <p>
  156. These newer molecular approaches to the study of biology are vindicating some of the practical observations
  157. of plant and animal breeders, and terms such as <em>telegony, heterosis,</em> and <em>xenia</em> might come
  158. into common use again, along with <em>genomic imprinting.
  159. </em>Here, I want to give examples of "hormonal imprinting" amd "genetic imprinting," and to show how the
  160. idea of the "retrovirus" or "mobile genetic elements" relates to practical health issues and therapies. The
  161. developing egg cell is constructed and modified in many ways during its growth. The nurse cells which
  162. surround it in the ovarian follicle inject massive quantities of material, especially RNA, into the
  163. expanding egg cell. Regulatory substances and energy production modify enzyme activities and structural
  164. proteins, which will influence the way it develops after fertilization. During the entire lifetime of the
  165. individual person, the developing egg cells are open to influences from the organism as a whole. Because of
  166. the Weismannian scientific culture, it's important to start with a few of the clearest interaction between
  167. the environment and the reproductive cell, but many other types of interaction are starting to be explored.
  168. It has been suggested that environmental stress is responsible for viral epidemics, by activating viruses in
  169. their animal hosts, and causing them to spread to humans. Whether that's true or not, it is well recognized
  170. that stress causes increased susceptibility to the development of viral infections. It also causes increased
  171. genetic variability, which is logical in the evolutionary sense, that a species should become more variable
  172. when its environmental niche has changed. The mobile genetic elements that were first recognized by Barbara
  173. McClintock are now considered to be the most important means by which stress increases genetic variability.
  174. In bacteria (J. Cairns<strong>;</strong> Salyers &amp; Shoemaker, 1996), genetic changes are known to occur
  175. in response to specific substances, which lead to adaptation to that substance. The mobile elements which
  176. are responsible for the defensive adaptive response to antibiotics are similar to viruses. <strong>In these
  177. instances, the genetic dogma which has been taught very recently in the universities couldn't have been
  178. more clearly disproved. So far, the tendency in the United States is to concentrate on the details
  179. because of their technological potential (for genetic engineering of lucrative products) and to ignore
  180. the larger biological meaning of this interaction of stress with genetics.
  181. </strong>
  182. </p>
  183. <p>
  184. Resistance to antibiotics is transmitted to other bacteria by "injecting," during conjugation of a resistant
  185. bacterium with a sensitive one, a small virus-like granule containing the DNA required for detoxifying the
  186. antibiotic, along with some adjoining genes. The antibiotic itself, producing stress, stimulates the
  187. formation of this genetic package. (Whole university courses used to be devoted to showing why such things
  188. couldn't happen.)
  189. </p>
  190. <p>
  191. The enzymes which cut out sections of DNA are the "restrictases," which are famous for their use in
  192. identifying samples of DNA. These "endonucleases" are activated by stress. In "excitotoxicity," which kills
  193. nerve cells through a combination of intense activation with deficient energy stores (i.e., stress), these
  194. enzymes are activated. In apoptosis, or "programmed cell death," these enzymes are activated, along with
  195. enzymes which repair the broken genes, and the resulting energy drain from an impossible repair job causes
  196. the cell's sudden dissolution. Between excitotoxicity and apoptosis, there are intermediate states, in which
  197. the dissolution is retarded or reversed.
  198. </p>
  199. <p>
  200. When the stress is more generalized, so that the cells survive, the more sensitive sections of DNA are
  201. rearranged within the cell. Some of them may escape as infective particles.
  202. </p>
  203. <p>
  204. Barbara McClintock wrote about the effects of stress causing genetic rearrangement, and traced the movements
  205. of the mobile genetic elements. At the same time, without knowing about her work, Leonell Strong was working
  206. with mice, exploring the role of "genetic instability" in causing cancer, and identifying estrogen and "milk
  207. particle," or "milk factor," a virus-like particle that interacted with estrogen, as causes of breast
  208. cancer. With only the elements of <em>stress,</em> the <em>endonucleases,</em> and the <em>mobile packets of
  209. genes,</em> adaptively increased variability, and the spreading of genes among a population can be
  210. explained. However, there is a subtler level at which the adaptations acquired by an indiviual can be passed
  211. on to offspring. This is "imprinting."
  212. </p>
  213. <p>
  214. "Genetic imprinting" is being studied mainly in terms of the covering of regions of DNA with methyl groups.
  215. This is thought to have evolved as a way to keep the endonucleases from attacking the DNA. Sections of DNA
  216. that have been methylated can be passed on to offspring in that form, and they can be traced as a pattern of
  217. gene activity or inactivity. The maternal genes function in a manner identifiably different from the
  218. paternal genes. Having passed through the mother's body, the genes have been modified.
  219. </p>
  220. <p>
  221. "Hormonal imprinting" refers to the great changes in sensitivity to hormones (and related substances) that
  222. persist after exposure to that substance early in life. When the mother's hormones are imbalanced during
  223. pregnancy or nursing, the baby is "imprinted" with an altered sensitivity to hormones. Leonell Strong showed
  224. that these effects could be exaggerated generation after generation. But--strangely, considering that he was
  225. a student of T. H. Morgan, who is considered to be the founder of classical genetics--<strong>
  226. Strong</strong>
  227. <strong>found that a single treatment, or a series of treatments, with an extract of liver, or with certain
  228. nucleosides (the units for constructing DNA), could reverse the course of generations of breeding, and
  229. eliminate the susceptibility to cancer.</strong>
  230. </p>
  231. <p>
  232. <strong> </strong>In modern terms, he was probably working with a combination of genetic imprinting and
  233. hormonal imprinting. His "milk factor" very probably was one of the "endogenous retroviruses," or mobile
  234. genetic elements. (However, Gaal, et al., 1998, found that imprinting factors can be transmitted in the
  235. milk.)
  236. </p>
  237. <p>
  238. Movable genetic elements appear to regulate normal developmental processes (Long, et al., 1998) and the
  239. introduction of new particles can "improve fitness." This is an aspect of the HIV controversy that has been
  240. completely ignored, as far as I can tell. Peter Duesberg argues that the presence of antibodies to the HIV
  241. indicates that the immune system is active, and that there is no evidence showing the virus to be harmful.
  242. My suggestion would be that the virus is probably present quietly in many people who have no antibodies to
  243. it, and that environmental toxins and other stressors cause it to be adaptively expressed, creating the
  244. possibility for an antibody response. The "viral particle" itself might be biologically useful, though this
  245. wouldn't exclude the possibility that an abnormal immunological response to it could have harmful
  246. repercussions.
  247. </p>
  248. <p>
  249. The importance of the retroviruses in the human genome hasn't been widely appreciated. ("almost 10%<strong>
  250. . . .</strong> homology with the retroviruses," Deb, et al, 1998.)
  251. </p>
  252. <p>
  253. Environmental pollution with estrogens and immunosuppressive substances, when it persists throughout the
  254. developmental period, and across generations, will be dangerous at levels much below those that show an
  255. immediate hormonal or immunosuppressive effect. Tests that determine the "mutagenicity" or "carcinogenicity"
  256. of a substance are performed within a context of a theoretical genetics which is demonstrably false<strong
  257. >;</strong>
  258. until the complexities of imprinting and transgenerational effects are taken into account, it would be wrong
  259. to accept the claim that there are "safe levels," or "thresholds of harmful effects."
  260. </p>
  261. <p>
  262. When babies are imprinted by the mother's diuretics, by milk substitutes, and by industrial effluents, the
  263. worst effects are likely to be seen decades later, or even generations later. There is a simple image that I
  264. think makes it possible to grasp as a whole the unity of things which have been described as existing on
  265. different "levels," the genetic, the metabolic, and the ecological. This is the image of an interaction
  266. between water and large molecules, such as proteins and nucleic acids, with the system--the way the large
  267. molecule is folded, and the way the water molecules are ordered--having more than one arrangement, or
  268. physical state, each state differing slightly in the amount of potential energy it contains. Then, the
  269. differences between respiratory energy (producing carbon dioxide and consuming electron-equivalents), and
  270. relatively anaerobic conditions, determine the probability that the system will return to its higher energy
  271. state after it has been perturbed.
  272. </p>
  273. <p>
  274. A brief perturbation amounts to simple perception and response, reflecting the basic "irritability" of life,
  275. to use Lamarck's term. But with more intense disturbances, the structures are altered at deeper levels, and
  276. structures will be restored with different degrees of completeness, and the organism will have adapted,
  277. according to its resources, either toward increased "fitness" and sensitivity, or toward decreased
  278. sensitivity.
  279. </p>
  280. <p>
  281. On the level of an individual, the movement away from fitness and sensitivity would resemble the development
  282. of aging and degenerative disease<strong>; </strong>
  283. on the level of a species, it would amount to "reverse evolution," a mammal would become more reptilian, a
  284. primate would become more rodent-like.
  285. </p>
  286. <p>
  287. Protective interventions, and therapies, will consist of things which protect the structures (preserving
  288. sensitivity, while blocking excessive stimulation), and which increase the energy resources. A great variety
  289. of physiological indicators show that substances such as progesterone, thyroid and carbon dioxide are acting
  290. "universally" as protectants, in ways that make sense only with some perspective such as this, of the
  291. systematic changes in the physical state of the living substance.
  292. <h3>REFERENCES</h3>
  293. Taruscio D, et al., <strong>
  294. Human endogenous retroviruses and environmental endocrine disrupters: a connection worth exploring?
  295. </strong> Teratology. 1998 Aug;58(2):27-8.
  296. </p>
  297. <p>
  298. Taruscio D, et al., <strong>Human endogenous retroviral sequences: possible roles in reproductive
  299. physiopathology.
  300. </strong> Biol Reprod. 1998 Oct;59(4):713-24
  301. </p>
  302. <p>
  303. Genome 1998 Oct;41(5):662-8. <strong>A single-primer PCR-based retroviral-related DNA polymorphism shared by
  304. two distinct human populations.</strong> Deb P, Klempan TA, O'Reilly RL, Singh SM Department of Zoology,
  305. University of Western Ontario, London, Canada. <strong>"Almost 10% of the human genome consists of DNA
  306. sequences that share homology with retroviruses.</strong>
  307. These sequences, which represent a stable component of the human genome <strong>
  308. (although some may retain the ability to transpose),</strong> remain poorly understood." "Such novel
  309. polymorphisms should provide useful markers and permit assessment of evolutionary mechanisms associated with
  310. retroviral-related genomic evolution. "
  311. </p>
  312. <p>
  313. Chromosoma 1991 Dec;101(3):141-56 <strong>Integration site preferences of endogenous retroviruses.</strong>
  314. Taruscio D, Manuelidis L. Yale Medical School, New Haven, CT 06510. "Retroviruses have the ability to
  315. integrate into the genome of their host, in many cases with little apparent sequence or site specificity.".
  316. <strong>"Retroviral elements in Alu-rich domains would be expected to be actively transcribed in all cells.
  317. Surprisingly, hybridization to blots of brain RNA showed an approximately 25 fold lower level of
  318. transcripts from these Alu associated elements than from retroviral sequences restricted to later
  319. replicating, heterochromatic domains." "Each host genome may utilize these elements for contrary, and
  320. possibly beneficial functions."
  321. </strong>
  322. </p>
  323. <p>
  324. <strong> </strong>APMIS Suppl 1998;84:37-42 <strong>The potential of integrons and connected programmed
  325. rearrangements for mediating horizontal gene transfer</strong>.. Sundstrom L. "Site-specific
  326. recombination of integrons, mediates transfer of single genes in small genomes and plasmids. Recent data
  327. suggest that new genes are recruited to the cassettes--the units moved by integrons. Integrons are resident
  328. in a class of transposons with pronounced target selectivity for resolution loci in<strong>
  329. broad host range plasmids. A resulting network of programmed transfer routes, with potential offshoots
  330. reaching into eukaryotic cells, may channel genes to unexpectedly remote organisms."
  331. </strong>"It seems very clear that integrons and associated programmed transfer mechanisms have high
  332. significance for the dissemination of antibiotic resistance genes in bacteria whereas further studies are
  333. needed to assess their importance for spreading of arbitrary genes <strong>in a wider range of host
  334. systems."</strong>
  335. </p>
  336. <p>
  337. Clin Infect Dis 1996 Dec;23 Suppl 1:S36-43. <strong>Resistance gene transfer in anaerobes: new insights, new
  338. problems.</strong> Salyers AA, Shoemaker NB. <strong>"Integrated gene transfer elements, called
  339. conjugative transposons, appear to be responsible for much of the transfer of resistance genes among
  340. Bacteroides species. Conjugative transposons not only</strong> transfer themselves but also mobilize
  341. coresident plasmids and excise and mobilize unlinked integrated elements." "An unusual feature of the
  342. Bacteroides conjugative transposons is that <strong>transfer of many of them is stimulated considerably by
  343. low concentrations of antibiotics. Thus, antibiotics not only select for resistant strains but also can
  344. stimulate transfer of the resistance gene</strong> in the first place."
  345. </p>
  346. <p>
  347. Genetics 1991 Aug;128(4):695-701 <strong>Adaptive reversion of a frameshift mutation in Escherichia
  348. coli.</strong> Cairns J, Foster PL Department of Cancer Biology, Harvard School of Public Health,
  349. Boston, Massachusetts 02115. Mutation rates are generally thought not to be influenced by selective forces.
  350. <strong>This doctrine rests on the results of certain classical studies of the mutations that make bacteria
  351. resistant to phages and antibiotics.</strong> We have studied a strain of Escherichia coli which
  352. constitutively expresses a lacI-lacZ fusion containing a frameshift mutation that renders it Lac-. Reversion
  353. to Lac+ is <strong>a rare event during exponential growth but occurs in stationary cultures when lactose is
  354. the only source of energy. No revertants accumulate in the absence of lactose, or in the presence of
  355. lactose if there is another, unfulfilled requirement for growth.</strong> The mechanism for such
  356. mutation in stationary phase is not known, but it requires some function of RecA which is apparently not
  357. required for mutation during exponential growth.
  358. </p>
  359. <p>
  360. Science 1993 Oct 15;262(5132):317-319. <strong>Whither directed mutation? </strong>
  361. Foster, P.L.
  362. </p>
  363. <p>
  364. Science 1995, 268(5209):418-420. <strong>Adaptive mutation in Escherichia coli: a role for
  365. conjugation.</strong> Radicella JP, Park PU, Fox, M.S. Nature 1998 Mar 12;392(6672):141-2<strong>
  366. Are retrotransposons long-term hitchhikers?</strong> Burke WD, Malik HS, Lathe WC 3rd, Eickbush TH.
  367. </p>
  368. <p>
  369. J Biomol Struct Dyn 1998 Feb;15(4):717-21 <strong>Mammalian retroposons integrate at kinkable DNA
  370. sites.</strong> Jurka J, Klonowski P, Trifonov EN "This suggests that during interaction with the
  371. endonucleolytic enzyme, or enzymes, DNA undergoes bending at the integration sites and kinks are formed, as
  372. initial steps in generating the nicks. Nicking at kinkable sites, particularly at TA steps, may also play a
  373. role in integration of other insertion elements."
  374. </p>
  375. <p>
  376. J. Mol Evol 1997 Dec;45(6):599-609 <strong>The evolution of MHC diversity by segmental duplication and
  377. transposition of retroelements.</strong> Kulski JK, Gaudieri S, Bellgard M, Balmer L, Giles K, Inoko H,
  378. Dawkins RL.
  379. </p>
  380. <p>
  381. Biochemistry (Mosc) 1997 Nov;62(11):1202-5. <strong>Telomerase is a true reverse transcriptase. A
  382. review.</strong> Cech TR, Nakamura TM, Lingner J Department of Chemistry and Biochemistry, Howard Hughes
  383. Medical Institute, University of Colorado,Boulder. <strong>"We find it remarkable that the same type of
  384. protein structure required for retroviral replication is now seen to be essential for normal chromosome
  385. telomere replication in diverse eukaryotes</strong>."
  386. </p>
  387. <p>
  388. Gene 1997 Dec 31;205(1-2):177-82 <strong>Mobile elements inserted in the distant past have taken on
  389. important functions.</strong> Britten RJ.
  390. </p>
  391. <p>
  392. Genetika 1994 Jun;30(6):725-30 <strong>["Adaptive transposition" of retrotransposons in the Drosophila
  393. melanogaster genome accompanying the increase in features of adaptability].
  394. </strong> Beliaeva ES, Pasiukova EG, Gvozdev V.A. . "<strong>The transpositions were accompanied by a
  395. dramatic increase in individual fitness (competitive success)."</strong>
  396. </p>
  397. <p>
  398. Genetika 1997 Aug;33(8):1083-93 <strong>[Stress induction of retrotransposon transposition in Drosophila:
  399. reality of the phenomenon, characteristic features, possible role in rapid evolution].</strong>
  400. Vasil'eva LA, Ratner VA, Bubenshchikova EV "This stress response involved mobilization of retrotransposons."
  401. <strong>"In all these cases, stress induction of retrotransposon transpositions was mediated by molecular
  402. mechanisms of the heat shock system-the general system of cell resistance to external and physiological
  403. stress factors. From the viewpoint of evolution, stress induction of transpositions is a powerful factor
  404. generating new genetic variation in populations under stressful environmental conditions.</strong>
  405. Passing through a "bottleneck," a population can rapidly and significantly alter its population norm and
  406. become the founder of new, normal forms."
  407. </p>
  408. <p>
  409. Mol Biol (Mosk) 1995 May-Jun;29(3):522-8 <strong>[Conserved regions of potential ORF1 protein products of
  410. mobile elements and retroviral proteins, encoded by the gag gene].
  411. </strong> Kanapin AA, Ivanov VA, Il'in IuV.
  412. </p>
  413. <p>
  414. Radiats Biol Radioecol 1995 May-Jun;35(3):356-63 <strong>[DNA analysis of retroposon-like genetic LINE
  415. elements in blood plasma of rats exposed to radio-diapason electromagnetic waves].</strong> [Article in
  416. Russian] Belokhvostov AS, Osipovich VK, Veselova OM, Kolodiazhnaia VA<strong>
  417. The elevation of LINE-elements' DNA level was revealed in blood plasma of rats exposed to
  418. electromagnetic waves.</strong> The amount of full-size 5'-containing LINE-elements copies was
  419. increased<strong>
  420. especially. Connection of this effect with retrotransposon activation and genetic instability condition
  421. of organism development is supposed.
  422. </strong>
  423. </p>
  424. <p>
  425. <strong> </strong>Dokl Akad Nauk 1995 Jan;340(1):138-40 <strong>[Induction of virus-like particles Tu1 by
  426. the mini-Tu1 element in the SPT3 mutant strain of Saccharomyces cerevisiae].
  427. </strong> Reznik NL, Zolotova LI, Shuppe NG.
  428. </p>
  429. <p>
  430. Dokl Akad Nauk 1994 Dec;339(6):838-41 <strong>[Extracellular virus-like particles retrotransposon Gypsy (MDG
  431. 4) as an infectivity factor].</strong> Semin BV, Il'in IuV.
  432. </p>
  433. <p>
  434. Mol Biol (Mosk) 1994 Jul-Aug;28(4):813-21.<strong>
  435. [Expression of the third open reading frame of the drosophila MDG4 retrotransposon similar to the
  436. retroviral env-genes, occurring through splicing].
  437. </strong> Avedisov SN, Il'in IuV "The presence of a third long open reading frame (ORF3) is the common
  438. feature of a number of Drosophila retrotransposons, including MDG4 (gypsy). <strong>Thus, these elements
  439. have a strong structural resemblance to the integrated forms of vertebrate retroviruses."</strong>
  440. "The regulation at the level of splicing is supposed to be one of the most important factors controlling the
  441. transposition frequency of MDG4."
  442. </p>
  443. <p>
  444. Genetika 1994 Jun;30(6):743-8 <strong>[Introduction of a single transpositionally-active copy of MDG4 into
  445. the genome of a stable line of Drosophila melanogaster causes genetic instability].</strong>
  446. Liubomirskaia NV, Shostak NG, Kuzin AB, Khudaibergenova BM, Il'in IuV, Kim AI. "A previously described
  447. system of a Drosophila melanogaster mutative strain (MS), which originates from a stable strain (SS), is
  448. characterized by genetic instability caused by transposition of the retrotransposon gypsy. New unstable
  449. strains were obtained by microinjections of the gypsy transposable copy into SS embryos." "Genetic
  450. instability in the MS system is apparently induced by a combination of two factors: the presence of a gypsy
  451. transposable copy and mutation(s) in the gene(s) regulating its transpositions."
  452. </p>
  453. <p>
  454. Genetika 1991 Mar;27(3):404-10 <strong>[Maintenance of the copy number of retrotransposon MDG3 in the
  455. Drosophila melanogaster genome].</strong> Glushkova IV, Beliaeva ESp, Gvozdev VA The genomes of
  456. laboratory stocks and natural population of Drosophila melanogaster contain 8-12 copies of retrotransposon
  457. MDG3 detected by in situ hybridization. Construction of genotypes with decreased MDG3 copy number using
  458. X-chromosome and chromosome 3 free of MDG3 copies <strong>results in appearance of hybrid genomes carrying
  459. up to 7-10 copies, instead of 2-4 copies expected.</strong> New MDG3 copies are detected in different
  460. genome regions, including the 42B hot spot of their location. The chromosomes, where new clusters of MDG3
  461. were observed, carry conserved "parental pattern" of MDG1 arrangement. <strong>
  462. The data obtained suggest the existence of genomic mechanism for maintenance of retrotransposon copy
  463. number on a definite level.</strong>
  464. </p>
  465. <p>
  466. <strong> </strong>Biull Eksp Biol Med 1998 Jul;126(7):4-14 <strong>[The role of retroposition in the
  467. self-regulation of genome processes (do genes program the body and retroposons program genome]?</strong>
  468. Bebikhov DV, Postnov AIu, Nikonenko TA.
  469. </p>
  470. <p>
  471. Genetika 1996 Jul;32(7):902-13 <strong>[Analysis of motifs of functional MDG2 sites in assuring its possible
  472. molecular functions].</strong> Ratner VA, Amikishiev VG "Enhancers of mobile genetic elements are
  473. assumed to determine modification of adjacent genes and polygenes. <strong>Excisions and transpositions of
  474. mobile elements seem to be induced by external stress factors or physiological factors through a
  475. heat-shock system."
  476. </strong>
  477. </p>
  478. <p>
  479. <strong> </strong>Genomics 1998 Dec 15;54(3):542-55 <strong>A long terminal repeat of the human endogenous
  480. retrovirus ERV-9 is located in the 5' boundary area of the human beta-globin locus control
  481. region.</strong> Long Q, Bengra C, Li C, Kutlar F, Tuan D. "Transcription of the human beta-like <strong
  482. >
  483. globin genes in erythroid cells</strong> is regulated by the far-upstream locus control region (LCR). In
  484. an attempt to define the 5' border of the LCR, we have cloned and sequenced 5 kb of new upstream DNA. We
  485. found an LTR <strong>retrotransposon belonging to the ERV-9 family of human endogenous retroviruses</strong>
  486. in the apparent 5' boundary area of the LCR." "This LTR is conserved in human and gorilla, indicating its
  487. evolutionary stability in the genomes of the higher primates. In both recombinant constructs and the
  488. endogenous human genome, the LTR enhancer and promoter activate the transcription of cis-linked DNA
  489. preferentially in erythroid cells. <strong>Our findings suggest the possibility that this LTR
  490. retrotransposon may serve a relevant host function in regulating the transcription of the
  491. beta-globin</strong> LCR." Copyright 1998 Academic Press.
  492. </p>
  493. <p>
  494. Genetika 1995 Dec;31(12):1605-13 <strong>[Heterologous induction of the retrotransposon Ty1: reverse
  495. transcriptase plays a key role in initiating the retrotransposition cycle].
  496. </strong> Reznik NL, Kidgotko OV, Zolotova LI, Shuppe NG A new method was developed to study the mechanism
  497. of initiation of the retrotransposition cycle: retrotransposons of Drosophila melanogaster, gypsy, copia,
  498. and 17.6 were expressed in yeast under the control of potent yeast promoters. <strong>
  499. Expression of retrotransposons induced formation of viruslike particles (VLPs) associated with
  500. full-length Ty1 RNA and DNA sequences.</strong> This phenomenon was termed heterologous induction.
  501. <strong>When the gene for reverse transcriptase of human immunodeficiency virus (HIV) was expressed in
  502. yeast, the same results were obtained. These data allowed us to assume the excess of active reverse
  503. transcriptase to play the central role in induction of transposition.</strong> Possible mechanisms of
  504. induction of Ty1 transposition by homologous and heterologous elements are discussed. Hum Exp Toxicol 1998
  505. Oct;17(10):560-3 <strong>Effect of retinoid (vitamin A or retinoic acid) treatment (hormonal imprinting)
  506. through breastmilk on the glucocorticoid receptor and estrogen receptor binding capacity of the adult
  507. rat offspring.</strong> Gaal A, Csaba G. "Hormonal imprinting occurs perinatally when the developing
  508. receptor and the appropriate hormone meet each other. The presence of related molecules in this critical
  509. period causes misimprinting. Ligands bound<strong>
  510. to a member of the steroid-thyroid receptor superfamily can disturb the normal maturation of other
  511. members of the family,</strong> which is manifested in altered binding capacity of the receptor and
  512. decreased or increased response of the receptor-bearing cell for life. Excess or absence of the hormone also
  513. can cause misimprinting." <strong>
  514. "The results of the experiment call attention to the transmission of imprinter molecules by breastmilk
  515. to the progenies, which can cause lifelong alterations at receptorial level and points to the human
  516. health aspect. Possible reasons for the differences between retinol and retinoic acid effects and in the
  517. sensitivity of receptors are discussed."
  518. </strong>
  519. </p>
  520. <p>
  521. <strong> </strong>Life Sci 1998;63(6):PL 101-5 <strong>Neonatal vitamin E treatment induces long term
  522. glucocorticoid receptor changes: an unusual hormonal imprinting effect.</strong> Csaba G, Inczefi-Gonda
  523. A. "Thousandfold tocopherol did not compete with labeled dexamethasone for their receptors,
  524. suggesting<strong>
  525. that neonatal vitamin E imprinting effect was not done at direct receptorial level."</strong>
  526. </p>
  527. <p>
  528. <strong> </strong>J Hypertens 1998 Jun;16(6):823-8 <strong>Female Wistar-Kyoto and SHR/y rats have the same
  529. genotype but different patterns of expression of renin and angiotensinogen genes.</strong> Milsted A,
  530. Marcelo MC, Turner ME, Ely DL "Female SHR/y rats have the parental Wistar-Kyoto rat autosomes and X
  531. chromosomes and have no chromosomes of spontaneously hypertensive rat origin; thus they are genetically
  532. equivalent to female Wistar-Kyoto rats." "The combination of removing estrogen early in development and
  533. supplementing the ovariectomized females with testosterone revealed strain differences in response of blood
  534. pressure." "Differences in regulation of renin-angiotensin system genes between strains may result from
  535. epigenetic mechanisms such as <strong>genome imprinting</strong> of these genes or of another gene that
  536. functions as a common regulator of renin and angiotensinogen."
  537. </p>
  538. <p>
  539. Gen Pharmacol 1998 May;30(5):685-7 <strong>Imprinting of thymic glucocorticoid receptor and uterine estrogen
  540. receptor by a synthetic steroid hormone at different times after birth.</strong> Csaba G, Inczefi-Gonda
  541. A. 1. "Single allylestrenol treatment (hormonal imprinting) of 3-day old rats reduced the density of thymus
  542. glucocorticoid receptors and increased the density of uterus estrogen receptors at adult age." "4. The
  543. experiments demonstrate that hormonal imprinting can be provoked by allylestrenol not only pre- or
  544. neonatally, as was done in previous experiments, but also a few days later. The imprintability was lost
  545. between the 4th and 8th day of life."
  546. </p>
  547. <p>
  548. Gen Pharmacol 1998 May;30(5):647-9 <strong>Fetal digoxin treatment enhances the binding capacity of thymic
  549. glucocorticoid receptors in adult female rats.</strong> Csaba G, Inczefi-Gonda A. 1. Hormonal imprinting
  550. is provoked in the perinatal critical period in the presence of the appropriate hormone or molecules similar
  551. to it. As a consequence of hormonal imprinting, the developing receptor finishes its maturation normally (in
  552. the presence of the adequate hormone) or abnormally (under the effect of foreign molecules that are able to
  553. bind to the receptor). 2. Digoxin--which has a steroid character--caused faulty imprinting by treatments at
  554. the 15th, 17th and 20th days of pregnancy. In the adult (3-month-old) animals, the density of thymic
  555. glucocorticoid receptors was significantly elevated, whereas the density of uterine estrogen receptors was
  556. not, without any change in receptor affinity. 3. The experiments call attention to the steroid receptor
  557. imprinting effect of fetal digoxin treatment that must be considered in regard to this treatment at this
  558. period and later in regard steroid treatments.
  559. </p>
  560. <p>
  561. Hum Exp Toxicol 1998 Feb;17(2):88-92 <strong>Transgenerational effect of a single neonatal benzpyrene
  562. treatment on the glucocorticoid receptor of the rat thymus.</strong> Csaba G, Inczefi-Gonda A. Hormonal
  563. imprinting is provoked perinatally by the appropriate <strong>hormone on its receptor,</strong>
  564. causing a life-long adjustment of the connection between the two participants. Faulty imprinting is caused
  565. by the presence of molecules similar to the hormone in this critical period, which results in a persistent
  566. alteration of the receptor. In the present experiment the transgenerational imprinting effect of a
  567. steroid-like environmental pollutant, benzpyrene, on the receptor binding capacity of filial thymic
  568. dexamethasone and uterine estrogen receptors was studied. The receptor density (Bmax) of the thymic
  569. glucocorticoid receptors of the males was reduced <strong>up to the third (F2) generation.
  570. </strong>In females this reduction was observed only in the F1 generation of treated animals. There was no
  571. change in receptor affinity (Kd). Uterine estrogen receptors were not subjected to transgenerational
  572. imprinting. The experiments demonstrate (1) the possibility of the <strong>
  573. transgenerational transmission</strong> of imprinting effect, (2) the differences of steroid receptors
  574. in different organs, and (3) the differences of male's and female's reactions from this aspect. The results
  575. call attention to the dangers of perinatal aromatic hydrocarbon exposition to the progeny generations.
  576. </p>
  577. <p>
  578. Genetika 1994 Apr;30(4):437-44 [Tv1--a new family of Drosophila virilis retrotransposons]. Andrianov BV,
  579. Shuppe NG.<strong>"The method is based on the hypothesis about the universal character of retrotransposition
  580. through reverse transcription."</strong>
  581. </p>
  582. <p>
  583. <strong> </strong>Genetika 1990 Mar;26(3):399-411 <strong>[Transpositional bursts and chromosome
  584. rearrangements in unstable lines of Drosophila].
  585. </strong> Gerasimova TI, Ladvishchenko AB, Mogila VA, Georgieva SG, Kiselev SL, Maksymiv DV "The phenomenon
  586. of transpositional bursts--massive simultaneous transpositions of mobile elements belonging to different
  587. structural classes and accompanied by multiple mutagenesis were earlier described. Although the mechanisms
  588. of this phenomenon are still unclear, it is obvious now that<strong>
  589. it embraces total genome and includes not only transpositions of different mobile elements but also
  590. recombination processes--homologous recombination</strong>
  591. for LTR's and gene conversion."
  592. </p>
  593. <p>
  594. Eksp Onkol 1986;8(2):29-32 <strong>
  595. [Nature of the endogenous retrovirus-like particles of the rat liver].
  596. </strong>
  597. Korokhov NP, Pyrinova GB, Kurtsman MIa, Tomsons VP, Salganik RI.
  598. </p>
  599. © Ray Peat Ph.D. 2009. All Rights Reserved. www.RayPeat.com
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